Webinar on DNA-Seq data analysis- Case studies

DNA-Seq data can be analyzed and visualized using an extensive workflow in Strand NGS software. The software has been designed for the biologists. Strand NGS supports analysis of whole exome, whole genome and targeted sequencing experiments. The DNA-Seq workflow includes the ability to detect variants (SNPs, MNPs and short InDels), annotate them with dbSNP, and … Continue reading “Webinar on DNA-Seq data analysis- Case studies”

Live webinar on Copy Number Detection in Inherited Disorders and Somatic Cancer

Copy number variants constitute a significant fraction of genomic alterations responsible for cancer and various inherited disorders. In a clinical setting, performing focused NGS testing based on a panel of relevant genes is both economical and provides faster results. Thus the ability to detect CNVs from gene panel based NGS tests increases the diagnostic yield … Continue reading “Live webinar on Copy Number Detection in Inherited Disorders and Somatic Cancer”

Interesting findings by ChIP-Seq and DNA-Seq analysis using Strand NGS

The year 2014 was a great year with exciting features and enhancements updated in Strand NGS. We take this opportunity to thank our clientele and well-wishers for their support and feedback. We wish you all a happy and prosperous new year and look forward to a more fruitful engagement in 2015. In this blog on … Continue reading “Interesting findings by ChIP-Seq and DNA-Seq analysis using Strand NGS”

Mapping RefSeq transcripts to the genome using UCSC

Transcript annotations are extensively used in NGS data analysis. In RNA-Seq, they are used at every step of the pipeline – to map spliced reads against the genome, perform quantification, detect novel exons etc. In DNA-Seq, they are used to predict the effect of variants detected in the sample. Clearly accurate transcript annotations are vital … Continue reading “Mapping RefSeq transcripts to the genome using UCSC”

Welcome to our blog

Our goal for this blog is to be a distraction that is useful for you as well as for us. We will use this venue to express our bewilderment and discoveries as we traverse the genome. Mostly, we’ll geek out over puzzling challenges in bioinformatics, but we may also delve into other relevant topics – … Continue reading “Welcome to our blog”